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# Copyright 1999-2025 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit autotools
DESCRIPTION="Mapping and Assembly with Qualities, mapping NGS reads to reference genomes"
HOMEPAGE="https://maq.sourceforge.net/"
SRC_URI="
https://downloads.sourceforge.net/${PN}/${P}.tar.bz2
https://downloads.sourceforge.net/${PN}/calib-36.dat.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
RDEPEND="virtual/zlib:="
DEPEND="${RDEPEND}"
PATCHES=(
"${FILESDIR}"/${P}-flags.patch
"${FILESDIR}"/${P}-bfr-overfl.patch
"${FILESDIR}"/${P}-gcc-4.7.patch
"${FILESDIR}"/${P}-remove-64bit-flag.patch
"${FILESDIR}"/${P}-gcc14-build-fix.patch
)
src_prepare() {
default
eautoreconf
}
src_install() {
default
insinto /usr/share/maq
doins "${WORKDIR}"/*.dat
doman maq.1
dodoc maq.pdf
}
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