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# Copyright 1999-2025 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit cmake flag-o-matic fortran-2
DESCRIPTION="Quick & Accurate Structural Alignment"
HOMEPAGE="https://zhanggroup.org/TM-align/"
SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz"
LICENSE="tm-align"
SLOT="0"
KEYWORDS="amd64 ~ppc ppc64 ~x86"
IUSE="custom-cflags"
BDEPEND=">=dev-build/cmake-3.28"
src_unpack() {
# S=${WORKDIR} is deprecated in cmake eclass
mkdir "${P}" || die
pushd "${P}" || die
unpack ${A}
popd || die
}
src_prepare() {
cp "${FILESDIR}"/CMakeLists.txt . || die
cmake_src_prepare
# Recommended by upstream
use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math
}
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